Tuesday, July 1 | |
10:25 - 11:15 | Michael Galperin: Comparative Genomics Approaches to Identifying Functionally Related Genes - Invited Lecture |
11:45 - 13:00 | Liana Amaya Moreno, Ozlem Defterli, Armin Fügenschuh, Gerhard-Wilhelm Weber: Vester's Sensitivity Model for Genetic Networks with Time-Discrete Dynamics |
Sebastian Wandelt, Ulf Leser: RRCA: Ultra-fast Multiple In-Species Genome Alignments | |
David A. Rosenblueth, Stalin Muñoz, Miguel Carrillo, Eugenio Azpeitia: Inference of Boolean Networks from Gene Interaction Graphs using a SAT Solver | |
14:30 - 15:45 | Laurent Lemarchand, Reinhardt Euler, Congping Lin, Imogen Sparkes: Modeling the Geometry of the Endoplasmic Reticulum Network |
Sean Maxwell, Mark R. Chance, Mehmet Koyutürk: Efficiently Enumerating All Connected Induced Subgraphs of a Large Molecular Network | |
Bogdan Iancu, Diana-Elena Gratie, Sepinoud Azimi, Ion Petre: On the Implementation of Quantitative Model Refinement | |
16:00 - 16:50 | Jason Papin: Network Analysis of Microbial Pathogens - Invited Lecture |
Wednesday, July 2 | |
9:00 - 9:50 | Uwe Ohler: Decoding Non-coding Regulatory Regions in DNA and RNA (I) - Invited Tutorial |
10:00 - 11:15 | Dimitris Polychronopoulos, Anastasia Krithara, Christoforos Nikolaou, Giorgos Paliouras, Yannis Almirantis, George Giannakopoulos: Analysis and Classification of Constrained DNA Elements with N-gram Graphs and Genomic Signatures |
Inken Wohlers, Mathilde Le Boudic-Jamin, Hristo Djidjev, Gunnar W. Klau, Rumen Andonov: Exact Protein Structure Classification Using the Maximum Contact Map Overlap Metric | |
Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Testuo Shibuya, Masao Nagasaki: SVEM: A Structural Variant Estimation Method using Multi-Mapped Reads on Breakpoints | |
11:45 - 13:00 | Claire Lemaitre, Liviu Ciortuz, Pierre Peterlongo: Mapping-free and Assembly-free Discovery of Inversion Breakpoints from Raw NGS Reads |
Giuseppe Narzisi, Bud Mishra, Michael C. Schatz: On Algorithmic Complexity of Biomolecular Sequence Assembly Problem | |
Ivo Hedtke, Ioana Lemnian, Matthias Müller-Hannemann, Ivo Grosse: On Optimal Read Trimming in Next Generation Sequencing and Its Complexity | |
14:30 - 15:20 | Annie Chateau, Rodolphe Giroudeau: Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem |
Ernst Althaus, Andreas Hildebrandt, Anna Katharina Hildebrandt (presented Sebastian Hoffmann): A Greedy Algorithm for Hierarchical Complete Linkage Clustering |
Thursday, July 3 | |
9:00 - 9:50 | Uwe Ohler: Decoding Non-coding Regulatory Regions in DNA and RNA (II) - Invited Tutorial |
10:00 - 11:15 | Carla Negri Lintzmayer, Zanoni Dias: On Sorting of Signed Permutations by Prefix and Suffix Reversals and Transpositions |
Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias: Heuristics for the Sorting by Length-Weighted Inversions Problem on Signed Permutations | |
Alexander Grigoriev, Steven Kelk, Nela Lekić: On Low Treewidth Graphs and Supertrees | |
11:45 - 13:00 | Carla Negri Lintzmayer, Zanoni Dias: On the Diameter of Rearrangement Problems |
Amina Noor, Aitzaz Ahmad, Bilal Wajid, Erchin Serpedin, Mohamed Nounou, Hazem Nounou: A Closed-Form Solution for Transcription Factor Activity Estimation using Network Component Analysis | |
Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto Sato, Yosuke Kawai, Masao Nagasaki: HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads |