AlCoB 2014 Program

A pdf version of the program available as a banner (1M)
or a leaflet (199k - to be printed on both sides).

Tuesday, July 1
9:15 - 10:15 Registration
10:15 - 10:25 Opening
10:25 - 11:15
Jason Papin
Michael Galperin: Comparative Genomics Approaches to Identifying Functionally Related Genes - Invited Lecture
11:15 - 11:45 Coffee Break
11:45 - 13:00
Erchin Serpedin
Liana Amaya Moreno, Ozlem Defterli, Armin Fügenschuh, Gerhard-Wilhelm Weber: Vester's Sensitivity Model for Genetic Networks with Time-Discrete Dynamics
Sebastian Wandelt, Ulf Leser: RRCA: Ultra-fast Multiple In-Species Genome Alignments
David A. Rosenblueth, Stalin Muñoz, Miguel Carrillo, Eugenio Azpeitia: Inference of Boolean Networks from Gene Interaction Graphs using a SAT Solver
13:00 - 14:30 Lunch
14:30 - 15:45
Bhaskar DasGupta
Laurent Lemarchand, Reinhardt Euler, Congping Lin, Imogen Sparkes: Modeling the Geometry of the Endoplasmic Reticulum Network
Sean Maxwell, Mark R. Chance, Mehmet Koyutürk: Efficiently Enumerating All Connected Induced Subgraphs of a Large Molecular Network
Bogdan Iancu, Diana-Elena Gratie, Sepinoud Azimi, Ion Petre: On the Implementation of Quantitative Model Refinement
15:45 - 16:00 Break
16:00 - 16:50
Annie Chateau
Jason Papin: Network Analysis of Microbial Pathogens - Invited Lecture

Wednesday, July 2
9:00 - 9:50
Michael Galperin
Uwe Ohler: Decoding Non-coding Regulatory Regions in DNA and RNA (I) - Invited Tutorial
9:50 - 10:00 Break
10:00 - 11:15
Giuseppe Narzisi
Dimitris Polychronopoulos, Anastasia Krithara, Christoforos Nikolaou, Giorgos Paliouras, Yannis Almirantis, George Giannakopoulos: Analysis and Classification of Constrained DNA Elements with N-gram Graphs and Genomic Signatures
Inken Wohlers, Mathilde Le Boudic-Jamin, Hristo Djidjev, Gunnar W. Klau, Rumen Andonov: Exact Protein Structure Classification Using the Maximum Contact Map Overlap Metric
Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Testuo Shibuya, Masao Nagasaki: SVEM: A Structural Variant Estimation Method using Multi-Mapped Reads on Breakpoints
11:15 - 11:45 Coffee Break
11:45 - 13:00
Uwe Ohler
Claire Lemaitre, Liviu Ciortuz, Pierre Peterlongo: Mapping-free and Assembly-free Discovery of Inversion Breakpoints from Raw NGS Reads
Giuseppe Narzisi, Bud Mishra, Michael C. Schatz: On Algorithmic Complexity of Biomolecular Sequence Assembly Problem
Ivo Hedtke, Ioana Lemnian, Matthias Müller-Hannemann, Ivo Grosse: On Optimal Read Trimming in Next Generation Sequencing and Its Complexity
13:00 - 14:30 Lunch
14:30 - 15:20
David A. Rosenblueth
Annie Chateau, Rodolphe Giroudeau: Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem
Ernst Althaus, Andreas Hildebrandt, Anna Katharina Hildebrandt: A Greedy Algorithm for Hierarchical Complete Linkage Clustering
15:30 Visit of the City

Thursday, July 3
9:00 - 9:50
Michael Galperin
Uwe Ohler: Decoding Non-coding Regulatory Regions in DNA and RNA (II) - Invited Tutorial
9:50 - 10:00 Break
10:00 - 11:15
Ulisses Dias
Carla Negri Lintzmayer, Zanoni Dias: On Sorting of Signed Permutations by Prefix and Suffix Reversals and Transpositions
Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias: Heuristics for the Sorting by Length-Weighted Inversions Problem on Signed Permutations
Alexander Grigoriev, Steven Kelk, Nela Lekić: On Low Treewidth Graphs and Supertrees
11:15 - 11:45 Coffee Break
11:45 - 13:00
Kaname Kojima
Carla Negri Lintzmayer, Zanoni Dias: On the Diameter of Rearrangement Problems
Amina Noor, Aitzaz Ahmad, Bilal Wajid, Erchin Serpedin, Mohamed Nounou, Hazem Nounou: A Closed-Form Solution for Transcription Factor Activity Estimation using Network Component Analysis
Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto Sato, Yosuke Kawai, Masao Nagasaki: HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads
13:00 Closing

File translated from TEX by TTHgold, version 4.00.
On 15 May 2014, 14:03.