1st International Conference on Algorithms for Computational Biology, AlCoB 2014
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Important dates
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1st International Conference on Algorithms for Computational Biology, AlCoB 2014
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Important dates
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A pdf version of the program available as a banner (1M)
or a leaflet (199k - to be printed on both sides).
| Tuesday, July 1 | |
| 9:15 - 10:15 | Registration |
| 10:15 - 10:25 | Opening |
| 10:25 - 11:15 Jason Papin | Michael Galperin: Comparative Genomics Approaches to Identifying Functionally Related Genes - Invited Lecture |
| 11:15 - 11:45 | Coffee Break |
| 11:45 - 13:00
Erchin Serpedin | Liana Amaya Moreno, Ozlem Defterli, Armin Fügenschuh, Gerhard-Wilhelm Weber: Vester's Sensitivity Model for Genetic Networks with Time-Discrete Dynamics |
| Sebastian Wandelt, Ulf Leser: RRCA: Ultra-fast Multiple In-Species Genome Alignments | |
| David A. Rosenblueth, Stalin Muñoz, Miguel Carrillo, Eugenio Azpeitia: Inference of Boolean Networks from Gene Interaction Graphs using a SAT Solver | |
| 13:00 - 14:30 | Lunch |
| 14:30 - 15:45Bhaskar DasGupta | Laurent Lemarchand, Reinhardt Euler, Congping Lin, Imogen Sparkes: Modeling the Geometry of the Endoplasmic Reticulum Network |
| Sean Maxwell, Mark R. Chance, Mehmet Koyutürk: Efficiently Enumerating All Connected Induced Subgraphs of a Large Molecular Network | |
| Bogdan Iancu, Diana-Elena Gratie, Sepinoud Azimi, Ion Petre: On the Implementation of Quantitative Model Refinement | |
| 15:45 - 16:00 | Break |
| 16:00 - 16:50 Annie Chateau | Jason Papin: Network Analysis of Microbial Pathogens - Invited Lecture |
| Wednesday, July 2 | |
| 9:00 - 9:50
Michael Galperin | Uwe Ohler: Decoding Non-coding Regulatory Regions in DNA and RNA (I) - Invited Tutorial |
| 9:50 - 10:00 | Break |
| 10:00 - 11:15
Giuseppe Narzisi | Dimitris Polychronopoulos, Anastasia Krithara, Christoforos Nikolaou, Giorgos Paliouras, Yannis Almirantis, George Giannakopoulos: Analysis and Classification of Constrained DNA Elements with N-gram Graphs and Genomic Signatures |
| Inken Wohlers, Mathilde Le Boudic-Jamin, Hristo Djidjev, Gunnar W. Klau, Rumen Andonov: Exact Protein Structure Classification Using the Maximum Contact Map Overlap Metric | |
| Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Testuo Shibuya, Masao Nagasaki: SVEM: A Structural Variant Estimation Method using Multi-Mapped Reads on Breakpoints | |
| 11:15 - 11:45 | Coffee Break |
| 11:45 - 13:00
Uwe Ohler | Claire Lemaitre, Liviu Ciortuz, Pierre Peterlongo: Mapping-free and Assembly-free Discovery of Inversion Breakpoints from Raw NGS Reads |
| Giuseppe Narzisi, Bud Mishra, Michael C. Schatz: On Algorithmic Complexity of Biomolecular Sequence Assembly Problem | |
| Ivo Hedtke, Ioana Lemnian, Matthias Müller-Hannemann, Ivo Grosse: On Optimal Read Trimming in Next Generation Sequencing and Its Complexity | |
| 13:00 - 14:30 | Lunch |
| 14:30 - 15:20 David A. Rosenblueth | Annie Chateau, Rodolphe Giroudeau: Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem |
| Ernst Althaus, Andreas Hildebrandt, Anna Katharina Hildebrandt: A Greedy Algorithm for Hierarchical Complete Linkage Clustering | |
| 15:30 | Visit of the City |
| Thursday, July 3 | |
| 9:00 - 9:50 Michael Galperin | Uwe Ohler: Decoding Non-coding Regulatory Regions in DNA and RNA (II) - Invited Tutorial |
| 9:50 - 10:00 | Break |
| 10:00 - 11:15
Ulisses Dias | Carla Negri Lintzmayer, Zanoni Dias: On Sorting of Signed Permutations by Prefix and Suffix Reversals and Transpositions |
| Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias: Heuristics for the Sorting by Length-Weighted Inversions Problem on Signed Permutations | |
| Alexander Grigoriev, Steven Kelk, Nela Lekić: On Low Treewidth Graphs and Supertrees | |
| 11:15 - 11:45 | Coffee Break |
| 11:45 - 13:00
Kaname Kojima | Carla Negri Lintzmayer, Zanoni Dias: On the Diameter of Rearrangement Problems |
| Amina Noor, Aitzaz Ahmad, Bilal Wajid, Erchin Serpedin, Mohamed Nounou, Hazem Nounou: A Closed-Form Solution for Transcription Factor Activity Estimation using Network Component Analysis | |
| Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto Sato, Yosuke Kawai, Masao Nagasaki: HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads | |
| 13:00 | Closing |