AlCoB 2018 Program

Monday, June 25

09:00 - 09:30Registration
09:30 - 09:40Opening
09:40 - 10:30Tatsuya Akutsu. Algorithms for Analysis and Control of Boolean Networks - Invited lecture
10:30 - 11:00Coffee break
11:00 - 12:15 Ricson Cheng, Matthew Dohlen, Chen Pekker, Gabriel Quiroz, Jincheng Wang, Ran Libeskind-Hadas and Yi-Chieh Wu. Reconciliation Feasibility of Non-binary Gene Trees under a Duplication-Loss-Coalescence Model

Andreas Dwi Maryanto Gunawan. Solving the Tree Containment Problem for Reticulation-visible Networks in Linear Time

Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami and Norbert Zeh. Polynomial-time Algorithms for Phylogenetic Inference Problems
12:15 - 13:45Lunch
13:45 - 14:35 Ben Raphael. Algorithms for Cancer Evolution - Invited lecture
14:35 - 14:50Break and Group photo
14:50 - 16:05 Alexsandro Alexandrino, Carla Lintzmayer and Zanoni Dias. Approximation Algorithms for Sorting Permutations by Fragmentation-weighted Operations

Klairton Brito, Andre Rodrigues Oliveira, Ulisses Dias and Zanoni Dias. Heuristics for the Sorting Signed Permutations by Reversals and Transpositions Problem

Guilherme Miranda, Carla Negri Lintzmayer and Zanoni Dias. Sorting Permutations by Limited-size Operations
16:05 - 16:20Coffee break
16:20 - 16:50 Poster session

Kun-Tze Chen and Chin Lung Lu. CSAR: A Contig Scaffolding Tool Using Algebraic Rearrangements

Zhao Hongya, Zhao Lan and Yan Hong. A Multiscale Co-clustering Analysis for Tensor Data Based on Slice-wise Factorization

Cristian Johanny Martínez Rey, Jonatan Gomez and Hernando Curtidor. Principal Component Analysis (PAC) to Predict Binding Peptides to Human Red Blood Cells

17:00 - 19:00Touristic visit

Tuesday, June 26

09:00 - 09:50Bin Ma. De Novo Protein Sequencing with Mass Spectrometry and Its Medical Applications - Invited lecture
09:50 - 10:20Coffee break
10:20 - 11:35 Michael Sadovsky, Sergey Tsarev and Maria Senashova. Fast Algorithm for Vernier Search of Long Repeats in DNA Sequences with Bounded Error Density

Eugen Czeizler, Alexandru Popa and Victor Popescu. Fixed Parameter Algorithms and Hardness of Approximation Results for the Structural Target Controllability Problem

Chenqi Mou. Symbolic Detection of Steady States of Autonomous Differential Biological Systems by Transformation into Block Triangular Form
11:35 - 11:50Break
11:50 - 12:40 Jordi Silvestre-Ryan and Ian Holmes. Consensus Decoding of Recurrent Neural Network Basecallers

Ezra B. Wijaya, Erwandy Lim, David Agustriawan, Chien-Hung Huang, Jeffrey J.P. Tsai and Ka-Lok Ng. Utilizing Imputation and Meta-analysis to Identify DNA-methylation-mediated MicroRNAs in Ovarian Cancer
12:40 - 12:50Closing
12:50 - Lunch