AlCoB 2016 Program

It is suggested to allocate 23 minutes for presentation and 2 minutes for questions. As for invited talks, 45 minutes and 5 minutes respectively.

Tuesday, June 21
9:00 - 9:30 Registration
9:30 - 9:40 Opening
9:40 - 10:30
María Botón-Fernández
David Sankoff: The Trees in the Peaks - Invited Lecture
10:30 - 11:00 Coffee Break
11:00 - 12:15
Simone Faro
Daniel Figueiredo: Relating Bisimulations with Attractors in Boolean Network Models
Tibor Kmet and Maria Kmetova: Neural Network Simulation of Feeding Adaptations of Daphnia
Charmi Panchal, Sepinoud Azimi and Ion Petre: Generating the Logicome of a Biological Network
12:15 - 12:30 Break
12:30 - 13:20
Sergio Santander-Jiménez
Cedric Chauve, Julien Courtiel and Yann Ponty: Counting, Generating and Sampling Tree Alignments
Esteban López-Camacho, María Jesús García Godoy, José García-Nieto, Antonio J. Nebro and José F. Aldana Montes: A New Multi-objective Approach for Molecular Docking Based on RMSD and Binding Energy
13:20 - 15:20 Lunch
15:20 - 16:10
Carlos Martín-Vide
Sergey P. Tsarev and Michael G. Sadovsky: New Error Tolerant Method for Search of Long Repeats in DNA Sequences
Sourya Bhattacharyya and Jayanta Mukhopadhyay: Accumulated Coalescence Rank and Excess Gene Count for Species Tree Inference [videoconference]
16:10 - 16:25 Break and Group Photo
16:25 - 17:15
S. Cenk Sahinalp
Evan Eichler: De Novo Genome Assembly and Structural Variation - Invited Lecture [videoconference]
17:15 - 17:30 Break
17:30 - 18:50
Saad Mneimneh

Loai Abdallah and Sherif Ganem: Diabetes Predictor Using Machine Learning Methods

Ashis Kumer Biswas, Baoju Zhang, Xiaoyong Wu and Jean X. Gao: Structure-based Clustering of the Patched RNA-seq Read Segments

Héctor Guardado Muro, Eunice E. Ponce-De-Leon, Francisco Diego Acosta and Aurora Torres: Comparing Two Evolutionary Algorithms for Inducing Chaos in a Gene Regulatory Network

Fitsumbirhan Tetemke Mehari, Julio Vera-González, Martin Eberhardt, Martina Cantone and Florian Dreyer: Gene Expression Profiling in Combination with Computational Analysis Highlights a Druggable Regulatory Core in Macrophage

Pablo Mier and Miguel A. Andrade-Navarro: FastaHerder2 and CABRA: User-friendly Web Tools to Research Protein Function and Evolution by means of Protein Clustering

Diogo Pratas, Raquel Silva, Armando Pinho and Paulo Ferreira: Comparing Genomes Using Relative Compression

Antonio J. Tallón-Ballesteros and Luís Correia: Applying Multivariate Attribute Selection in Bioinformatics Classification Problems to Enable Immediate Accurate Models with Naïve Bayes Algorithms

Antonio J. Tallón-Ballesteros and María Rodríguez-Romero: Neural Networks to Cope with Multi-class Ultra-high Dimensional Supervised Machine Learning Problems
20:00 -  Guided visit to the City

Wednesday, June 22
9:00 - 9:50
Miguel A. Vega-Rodríguez
S. Cenk Sahinalp: Big Data Algorithmics for Cancer Genomics - Invited Lecture
9:50 - 10:20 Coffee Break
10:20 - 11:35
Daniel Figueiredo
Agnieszka Mykowiecka and Pawel Górecki: Bootstrapping Algorithms for Gene Duplication and Speciation Events
Laura Urbini, Blerina Sinaimeri, Catherine Matias and Marie-France Sagot: Robustness of the Parsimonious Reconciliation Method in Cophylogeny
Carlo Comin, Anthony Labarre, Romeo Rizzi and Stéphane Vialette: Sorting with Forbidden Intermediates
11:35 - 11:50 Break
11:50 - 13:05
Carlo Comin
Simone Faro: Evaluation and Improvement of Fast Algorithms for Exact Matching on Genome Sequences
Mikko Rautiainen, Leena Salmela and Veli Mäkinen: Identification of Variant Compositions in Related Strains without Reference
Saad Mneimneh and Syed Ali Ahmed: Gibbs/MCMC Sampling for Multiple RNA Interaction with Sub-optimal Solutions
13:05 - 13:15 Closing
13:15 -  Lunch