Accepted papers

 

  • → Md Momin Al Aziz, Parimala Thulasiraman and Noman Mohammed. Parallel Generalized Suffix Tree Construction for Genomic Data
  • → Edward Allen, John Farrell, Alexandria Harkey, David John, Gloria Muday, James Norris and Bo Wu. Time Series Adjustment Enhancement of Hierarchical Modeling of Arabidopsis Thaliana Gene Interactions
  • → Ernst Althaus, Andreas Hildebrandt and Domenico Mosca. Learning Molecular Classes from Small Numbers of Positive Examples Using Graph Grammars
  • → Paola Bonizzoni, Alessia Petescia, Yuri Pirola, Raffaella Rizzi, Jens Stoye, Rocco Zaccagnino and Rosalba Zizza. Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as Representations of Sequencing Reads for Machine Learning
  • → Hannah Brown, Lei Zuo and Dan Gusfield. Comparing Integer Linear Programming to SAT-solving for Hard Problems in Computational and Systems Biology
  • → Jiarui Chen, Hong-Hin Cheong and Weng In Siu. BESTox: A Convolutional Neural Network Regression Model Based on Binary-encoded SMILES for Acute Oral Toxicity Prediction of Chemical Compounds
  • → Remie Janssen, Mark Jones and Yukihiro Murakami. Combining Networks Using Cherry Picking Sequences
  • → Remie Janssen and Yukihiro Murakami. Linear Time Algorithm for Tree-child Network Containment
  • → Wenwen Ju and Chenqi Mou. Exploiting Variable Sparsity in Computing Equilibria of Biological Dynamical Systems by Triangular Decomposition
  • → Mohsen Katebi, Pedro Feijao, Julius Booth, Mehrdad Mansouri, Sean La, Alex Sweeten, Seyed Reza Miraskarshahi, Mathew Nguyen, Johnathan Wong, William Hsiao, Cedric Chauve and Leonid Chindelevitch. PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals
  • → Misagh Kordi and Mukul S. Bansal. TreeSolve: Rapid Error-correction of Microbial Gene Trees
  • → Kaari Landry, Aivee Teodocio, Manuel Lafond and Olivier Tremblay-Savard. Novel Phylogenetic Network Distances Based on Cherry Picking
  • → Shaoheng Liang, Qingnan Liang, Rui Chen and Ken Chen. Stratified Test Alleviates Batch Effects in Single-cell Data
  • → Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias and Zanoni Dias. Reversals Distance Considering Flexible Intergenic Regions Sizes
  • → Yining Liu, Sachin Kadyan and Itsik Pe'Er. A Recovery Algorithm and Pooling Designs for One-stage Noisy Group Testing under the Probabilistic Framework
  • → Sayan Mandal, Aldo Guzmán-Sáenz, Niina Haiminen, Saugata Basu and Laxmi Parida. A Topological Data Analysis Approach on Predicting Phenotypes from Gene Expression Data
  • → Shunfu Mao, Yihan Jiang, Edwin Mathew and Sreeram Kannan. BOAssembler: A Bayesian Optimization Framework to Improve RNA-Seq Assembly Performance
  • → Alexsandro Oliveira Alexandrino, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias and Zanoni Dias. Reversal Distance on Genomes with Different Gene Content and Intergenic Regions Information
  • → Andre Rodrigues Oliveira, Geraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias and Zanoni Dias. A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions
  • → David Schaller, Manuela Geiss, Marc Hellmuth and Peter F. Stadler. Best Match Graphs with Binary Trees
  • → Gabriel Siqueira, Klairton Brito, Ulisses Dias and Zanoni Dias. Heuristics for Reversal Distance between Genomes with Duplicated Genes
  • → Eleanor Wedell, Yirong Cai and Tandy Warnow. PLUSplacer: Scalable and Accurate Phylogenetic Placement
  • → Lucia Williams and Brendan Mumey. Extending Maximal Perfect Haplotype Blocks to the Realm of Pangenomics
  • → James Willson, Mrinmoy Saha Ruddur and Tandy Warnow. Comparing Methods for Species Tree Estimation with Gene Duplication and Loss
  • → Yin Yao and Martin Frith. Improved DNA-versus-Protein Homology Search for Protein Fossils
  • → Zhe Yu, Chunfang Zheng and David Sankoff. Gaps and Runs in Syntenic Alignments
  • → Paul Zaharias, Vladimir Smirnov and Tandy Warnow. The Maximum Weight Trace Alignment Merging Problem